Manufacturing facility for non-alcoholic drink, the parts of the food industry, disposes wastewater which includes high organic concentration and low nitrogen, phosphorus concentration. For this kind of wastewater, the treatment plant consists mainly of aerobic reactor and chemical coagulation process. And sand-filter or activated carbon process is normally installed further. However, aerobic reactor must have long HRT to treat high concentration of organic contaminant included in this wastewater, so the large site area is required. And settling tank which is normally applied for wastewater treatment facility has some problems such as water quality degradation caused by the sludge spill. To solve these problems, we applied MBR system for the wastewater. And the MBR pilot plant was installed nearby the wastewater treatment facility of W food factory and operated during long term to evaluate treatment efficiency. This plant was operated about 3 months and than the result was 97% of organic removal rate on conditions of flow rate 20 m³/day, HRT 29 hr, recycle 4Q.However, contaminant removal ratio of bio-reactor decreased and TMP of membrane increased rapidly on more conditions.